At this time, there is unfortunately not a permanent fix for this problem. However, there is a "workaround" that you can do each time prior to printing the checks. Each time you are about to print a check from your personal finance software, open Check Designer, and Print Preview the check design. Leave Check Designer open, but minimize it, and return to your personal finance software and print your check. This will force the MICR position into the correct spot.
Please check the KB articles on this site in the future, as a patch will be available as soon as one is developed to correct this problem.